search

glygener / glygen-issues

Repository for public GlyGen tickets
GNU General Public License v3.0
0 stars 0 forks source link

Push Protein BCOs to https://data.tst.glygen.org/ #1881

Closed katewarner closed 3 days ago

katewarner commented 1 week ago

All protein BCOs for 2.7 have been created and have passed the check-bco2filename-mapping.py check.

Please push the protein BCOs to TST #1742

rykahsay commented 4 days ago

I cannot push "protein BCOs" -- all BCOs have to be ready and there shouldn't be any error when you run "check-bco2filename-mapping.py".

@ubhuiyan why don't we have BCO for rat_proteoform_glycosylation_sites_carbbank

NO-BCO,rat_proteoform_glycosylation_sites_carbbank.csv,ERROR,in_fs
jeet-vora commented 4 days ago

@rykahsay can you look at the ticket - https://github.com/glygener/glygen-issues/issues/1895

ubhuiyan commented 3 days ago

Hi all, yes once the rat carbbank dataset is removed from the reviewed file that BCO error should resolve. I have retired the dataset and citations BCOs as well.

Otherwise, I see no other errors with proteoform or glycan BCOs/datasets. @rykahsay after you remove rat_proteoform_glycosylation_sites_carbbank.csv, please proceed with processing all BCOs. Thank you.