PMID: 23516363 Glycomic analysis of human respiratory tract tissues and correlation with influenza virus infection

[Mindyporterfield]

Flu

[Mindyporterfield]

• [x] Mindy- read paper, id data to be curated (which figures etc), draw an example structure paying attention to reducing end type (free or reduced) and modifications (permethylation). Write a ticket for Anh and link example structure.

• [x] Anh-Draw assigned structures using GRITS, export as gws file and put in the corresponding folder in sharepoint, comment in github to let me know its done.

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• [x] Mindy-check structures, give any needed feedback

• @senaarpinar

• [ ] convert structures (Sena) and get glytoucan ids, put excel in in the GWS folder Flu

Mindy -proceed with the rest of the curation workflow

• [ ] -verify structures match glytoucan structure
• [ ] -Fill in remaining info for species, etc https://docs.google.com/document/d/1QPWU29l6pzo8bKIQ6epEidPDDxyp-5JQk9drhS-zJOg/edit#heading=h.urs6nll5b27n
• [ ] -deposit in sharepoint and comment on ticket
• [ ] https://docs.google.com/document/d/1QPWU29l6pzo8bKIQ6epEidPDDxyp-5JQk9drhS-zJOg/edit#heading=h.urs6nll5b27n

[senaarpinar]

@Mindyporterfield I generated the excel file and uploaded it to the same folder

[senaarpinar]

uploaded a new version of the excel file (after rerunning with Rene's changes to handle structures with brackets)

[Mindyporterfield]

@senaarpinar can you re run the GWS files to get the new format incorporated. Also please keep the files separate rather than combining them. Thank you

[senaarpinar]

@Mindyporterfield I reran and uploaded the separate files. Please have a look and let me know if you need anything different