PMID: 22988249 Regulation of glycan structures in murine embryonic stem cells: combined transcript profiling of glycan-related genes and glycan structural analysis - Githubissues

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PMID: 22988249 Regulation of glycan structures in murine embryonic stem cells: combined transcript profiling of glycan-related genes and glycan structural analysis #398

Open Mindyporterfield opened 1 year ago

Mindyporterfield commented 1 year ago

MouseStemCell249

Mindyporterfield commented 1 year ago

[x] Mindy- read paper, id data to be curated (which figures etc), draw an example structure paying attention to reducing end type (free or reduced) and modifications (permethylation). Write a ticket for Anh and link example structure.
[x] Anh-Draw assigned structures using GRITS, export as gws file and put in the corresponding folder in sharepoint, comment in github to let me know its done.
[ ] Mindy-check structures, give any needed feedback

Mindy -proceed with the rest of the curation workflow

[ ] -convert structures (Sena) and get glytoucan ids
[ ] -verify structures match glytoucan structure
[ ] -Fill in remaining info for species, etc https://docs.google.com/document/d/1QPWU29l6pzo8bKIQ6epEidPDDxyp-5JQk9drhS-zJOg/edit#heading=h.urs6nll5b27n
[ ] -deposit in sharepoint and comment on ticket

Mindyporterfield commented 6 months ago

Supplement Fig 4-A,B,C,D,E Fig 7

apnguyen98 commented 5 months ago

The GWS files for this paper can be found here: https://gwu0.sharepoint.com/sites/GlyGenTeam-GRP/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=uzAw5z&cid=3ea8ca4e%2De0b3%2D49e0%2D8085%2D0d615c2965d6&FolderCTID=0x01200081407FA815A7124E846BD764353D93CC&id=%2Fsites%2FGlyGenTeam%2DGRP%2FShared%20Documents%2FPaper%20Curation%2FPMID%C2%A022988249%2Dmousestem%2FGWS&viewid=6ffb8fed%2D81e7%2D4af7%2Dbfcd%2Da6f29c268132