Closed ReneRanzinger closed 9 months ago
Let @Shovan5795 know once you have a first version of this file. I can talk with Vijay and see if there are change requests.
@kmartinez834 Add datasets to target for this task...
@ReneRanzinger no need for meeting on Friday, I will provide info to Robel so he can generate these datasets.
@rykahsay the files to target are listed here: generated/misc/files_for_udel_dataset.csv
Do you have time to create the dataset for Vijay this week? If not, let me know and I will fit it into my schedule.
@kmartinez834
I have created a script for (you can modify it if it is missing something), and have an new file (files_for_udel_dataset.csv -- which has now three fields) that can work with the script. This new file is not fully populated -- you need to edit/fully populate it.
I have moved the file you created to files_for_udel_dataset.csv-backup
cd /software/glygen/
$ python3 make-udel-dataset.py
The curated and reference files for Tasks 1.1 and 1.2 are located in this Sharepoint folder: Literature Mining
Direct links to the file and README: literature_mining_t1.2.csv README.xlsx
PMID
Disease ID
Species ID
Tissue ID
Cell line ID
This table is for Vijay.