Closed rykahsay closed 9 months ago
@rykahsay I previously commented out the rows that were dead or not used in any datasets.
After checking all the commented rows again, I removed the comment from the following, as they do appear in a dataset, however some just point to a generic homepage. There were also a couple errors that are now corrected:
protein_xref_entrez,Entrez,https://www.ncbi.nlm.nih.gov/gene/%s,7515|3717|5290
protein_xref_hepatitisconline,HepatitisCOnline,https://www.hepatitisc.uw.edu/page/%s/biology,hcv
protein_xref_viruspathogenresource,ViPR,https://www.viprbrc.org/brc/home.spg?decorator=flavi_%s,hcv
protein_xref_prosite_prorule,PROSITE-PRORULE,https://prosite.expasy.org/rule/%s,PRU00498|PRU00076|PRU00415
protein_xref_prosite-prorule,PROSITE-PRORULE,https://prosite.expasy.org/rule/%s,PRU00498|PRU00076|PRU00415
glycan_xref_motif,Glycan Motif,https://glycomotif.glyomics.org/glycomotif/%s,GGM.000001|GGM.000081|GGM.000113
protein_xref_brenda,BRENDA Enzymes,https://www.brenda-enzymes.org/enzyme.php?ecno=%s|5.5.1.4|3.4.11.1|3.4.21.98
"not used in any datasets" should not be a reason to comment them out. Please uncomment any of the following if they lead to a valid (not dead) link.
glycan_xref_cfg
glycan_xref_glycan_type
glycan_xref_glycosciencesde
glycan_xref_harvard
glycan_xref_inchi_key
glycan_xref_monosaccharide_residue_name
glycan_xref_unicarbkb
protein_xref_go
protein_xref_unicarbkb
protein_xref_uniprotkb_proteinname
tissue_xref_uberon
Done.
--> glycan_xref_harvard
does not exist, did you mean glycan_xref_harvardu
? This one was not commented out though.
@kmartinez834 -- I remember you had a task to identify those URL templates resulted in broken links. I am not sure why these many of them are commented out. For example, I don't know why this row is commented.
protein_xref_uniprotkb_proteinname,UniProtKB,https://www.uniprot.org/uniprot/%s#names_and_taxonomy,