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glygener / glygen.cfde.generator

Java program for the generation of CFDE metadata files from GlyGen data.
GNU General Public License v3.0
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Test first version #12

Closed ReneRanzinger closed 2 years ago

ReneRanzinger commented 2 years ago

The attached file contains the first version of the complete conversion of the 3 files : output.zip

Its important to check the error and warning log in the root level. Errors will either lead to abortion for the entire file or a single line. Warnings can be caused if for a protein no Ensemble ID was found, or the provided terms (taxon, anatomy, proteins) have the incorrect notation. Warnings should be fixed long term by providing correct mapping files. Errors need to fix right now.

I run it with the old presubmission tool. It still has the error related to the file format: FATAL: Term 'data:3021' has no name: aborting, please check integrity of 'file_format' reference file(s).

That needs to be fixed or the program will not finish.

ReneRanzinger commented 2 years ago

New version of the file: 2022.04.05.zip

jeet-vora commented 2 years ago

I have checked all the files that contained data and it looks good. The error_log is empty which is good. Will proceed to the next step.