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glygener / glygen.cfde.generator

Java program for the generation of CFDE metadata files from GlyGen data.
GNU General Public License v3.0
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Problem using 'OBI:0001985' in assay type and analysis type #22

Closed ReneRanzinger closed 2 years ago

ReneRanzinger commented 2 years ago

Hi,

During the last submission another problem surfaced when running the submission prep and frictionless tool:

Term 'OBI:0001985' has no name: if the term ID isn't a typo, please check integrity of 'assay_type' reference file(s).

Term 'OBI:0001985' has no name: if the term ID isn't a typo, please check integrity of 'analysis_type' reference file(s).

We submitted new data files based on glycan microarray assays. OBI does not have this term but a parent term (microarray assay: OBI:0001985). When adding this term to the “assay_type” column of files.tsv the first error above showed up (during the prep and submission). I also tried to use it for “analysis_type” but a similar error appeared. Overall, I am not sure about the difference between assay and analysis in this context anyway.

Can you please:

  1. Clarify the difference between assay and analysis in this context
  2. Let us know why 'OBI:0001985' was not accepted during the submission.

Best, René

ReneRanzinger commented 2 years ago

HELP-426

ReneRanzinger commented 2 years ago

Tested by @jeet-vora that this issue is no longer present in the submission tool.