I am trying to figure out how to make productive use of the (perl) swig bindings for jellyfish, in particular jellyfish::HashCounter, but there's something I don't understand. Once you've populated a jf database (with HashCounter::add()), how do you make use of the database?
For example:
Can you write it to disk?
Can you iterate over the mers?
If not, what is the intended functionality of this class?
I would like to be able to access the HashCounter's jf database using methods like those in ReadMerFile.
I really appreciate the work you've put into this toolset.
I am trying to figure out how to make productive use of the (perl) swig bindings for jellyfish, in particular jellyfish::HashCounter, but there's something I don't understand. Once you've populated a jf database (with HashCounter::add()), how do you make use of the database?
For example:
If not, what is the intended functionality of this class?
I would like to be able to access the HashCounter's jf database using methods like those in ReadMerFile.
I really appreciate the work you've put into this toolset.