gmarcais
commented
10 years ago On Tue, Apr 29, 2014 at 6:29 AM, Ben J Woodcroft notifications@github.comwrote:
I can count on one hand bioinformatics programs I actually like, and with these new arbitrary kmer sizes, swig, and bloom filters, Jellyfish is about to make it there. Really nice work.
In general Ruby users expect to install by using Rubygems, not by compiling from source. I'd be happy to make that happen, if you like. It would also be good to get it listed on http://biogems.info
Thank you for the kind words.
If you would like to contribute a rubygem, I would be delighted. In the latest commit, I added some documentation to the SWIG files. These can become ri documentation with the command 'rdoc -E cxx=c -f ri jellyfish_wrap.cxx'. The output is not perfect, but it generates documentation for both Python and Ruby at once (but not Perl, bouh). It would be great to include the ri documentation in the gem as well.
And I am open to list it on biogems when it is a little more polished.
Guillaume.
You can merge this Pull Request by running
git pull https://github.com/wwood/Jellyfish patch-1
Or view, comment on, or merge it at:
https://github.com/gmarcais/Jellyfish/pull/15 Commit Summary
- Update Readme.md
File Changes
- M swig/Readme.mdhttps://github.com/gmarcais/Jellyfish/pull/15/files#diff-0(2)
Patch Links:
- https://github.com/gmarcais/Jellyfish/pull/15.patch
- https://github.com/gmarcais/Jellyfish/pull/15.diff
— Reply to this email directly or view it on GitHubhttps://github.com/gmarcais/Jellyfish/pull/15 .
I can count on one hand bioinformatics programs I actually like, and with these new arbitrary kmer sizes, swig, and bloom filters, Jellyfish is about to make it there. Really nice work.
In general Ruby users expect to install by using Rubygems, not by compiling from source. I'd be happy to make that happen, if you like. It would also be good to get it listed on http://biogems.info