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gmarcais / Jellyfish

A fast multi-threaded k-mer counter
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jf file not being written #150

Open Tj-Idowu opened 5 years ago

Tj-Idowu commented 5 years ago

I am trying to run jellyfish on paired end fq files with this code jellyfish count -m 31 -s 5G -t 6 -C /Infant_Metagenomic-Data/Data/Clean_Reads/FCHLCGNBBXX_L3_wHAXPI058873-95_1.fq /Infant_Metagenomic-Data/Data/Clean_Reads/FCHLCGNBBXX_L3_wHAXPI058873-95_2.fq -o /Infant_Metagenomic-Data/BIGSI/jellysting/FCHLCGNBBXX_L3_wHAXPI058873-95.jf. The code is running however no output files are being made after 4 days of running. Can you please point out what I'm doing wrong here?

gmarcais commented 5 years ago

Are you running the latest version 2.3.0?