Hi, my name is Samir. I am a postdoctoral researcher at the Icahn School of Medicine of Mount Sinai. I have generated HiC data and want to validate some interactions by DNA FISH. I am using the OligoMiner pipeline to generate OligoPaint DNA FISH probes. I want to use a script in the pipeline to screen my probes against high abundance k-mers. This script requires Jellyfish to be installed and in the PATH, and then I have to create a Jellyfish dictionary. I installed it on my mac with this command "conda install -c bioconda jellyfish"
The packages were installed, but I don't find Jellyfish in the PATH. How do I get it there? I am quite new to bioinformatics. I would really appreciate your help. Thanks!
Hi, my name is Samir. I am a postdoctoral researcher at the Icahn School of Medicine of Mount Sinai. I have generated HiC data and want to validate some interactions by DNA FISH. I am using the OligoMiner pipeline to generate OligoPaint DNA FISH probes. I want to use a script in the pipeline to screen my probes against high abundance k-mers. This script requires Jellyfish to be installed and in the PATH, and then I have to create a Jellyfish dictionary. I installed it on my mac with this command "conda install -c bioconda jellyfish"
The packages were installed, but I don't find Jellyfish in the PATH. How do I get it there? I am quite new to bioinformatics. I would really appreciate your help. Thanks!