How does Jellyfish behave in presence of ambiguous nucleotides (such as N)?

gmarcais / Jellyfish

A fast multi-threaded k-mer counter

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Closed ashenflower closed 2 years ago

lijzijie commented 1 year ago

Does anyone know the answer?

ashenflower commented 1 year ago

Hi @lijzijie ,

as far as I could see, they are just not taken into account.

lijzijie commented 1 year ago

@ashenflower Thanks