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gmarcais / Jellyfish

A fast multi-threaded k-mer counter
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Where can I find the 2.0 version of Jellyfish? #196

Open jingydz opened 1 year ago

jingydz commented 1 year ago

INSTALL

build]$ make Scanning dependencies of target PanGenieLib [ 1%] Building CXX object src/CMakeFiles/PanGenieLib.dir/emissionprobabilitycomputer.cpp.o [ 2%] Building CXX object src/CMakeFiles/PanGenieLib.dir/copynumber.cpp.o [ 4%] Building CXX object src/CMakeFiles/PanGenieLib.dir/commandlineparser.cpp.o [ 5%] Building CXX object src/CMakeFiles/PanGenieLib.dir/columnindexer.cpp.o [ 7%] Building CXX object src/CMakeFiles/PanGenieLib.dir/dnasequence.cpp.o [ 8%] Building CXX object src/CMakeFiles/PanGenieLib.dir/fastareader.cpp.o [ 10%] Building CXX object src/CMakeFiles/PanGenieLib.dir/genotypingresult.cpp.o [ 11%] Building CXX object src/CMakeFiles/PanGenieLib.dir/histogram.cpp.o [ 13%] Building CXX object src/CMakeFiles/PanGenieLib.dir/hmm.cpp.o 。。。 [ 38%] Linking CXX executable PanGenie-graph /Parastor300s_G30S/zhangjj/software/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/9.3.0/../../../../x86_64-conda-linux-gnu/bin/ld: cannot find -ljellyfish-2.0 collect2: error: ld returned 1 exit status make[2]: [src/CMakeFiles/PanGenie-graph.dir/build.make:104: src/PanGenie-graph] Error 1 make[1]: [CMakeFiles/Makefile2:166: src/CMakeFiles/PanGenie-graph.dir/all] Error 2 make: *** [Makefile:114: all] Error 2 build]$ jellyfish --version jellyfish 2.2.10

I need version 2.0 of Jellyfish, but I can't find it in the release. Can someone please tell me where to find it? Thank you in advance.