gmarcais
commented
9 years ago Hi Ram,
the big.sh test is sadly not run very often. I would not be surprised if it accumulated bit rot. Given that all the other tests pass, (as they should), I think that your installation is fine.
Can you give me the content of the tests/big.log file?
Guillaume.
On Mon, May 11, 2015 at 5:35 PM, Ramanandan notifications@github.com wrote:
Dear Guillaume Marcais,
I am Ram, I have recently started to work on metagenomics analysis. I would like to thank you and your research team for coming up with a wonderful application for microbial community.
I have installed the latest version of JELLYFISH 1.1.11. from this url ( http://www.cbcb.umd.edu/software/jellyfish/). I followed the instructions mentioned in the readme file. After the installation steps, I performed 2 different tests.
1) To run the built-in tests. This test was successful. All the tests were pass except one tests/big.sh was skipped. 2) To tests on large dataset. In this test one failed (tests/big.sh). Remaining 19 tests were pass.
I have pasted the error for your reference. [image: tests_big_sh] https://cloud.githubusercontent.com/assets/11878969/7575603/f98f8d8e-f803-11e4-80d2-68887c0f6455.png
1 of 20 tests failed See ./test-suite.log Please report to gmarcais@umd.edu
make[2]: * [test-suite.log] Error 1 make[2]: Leaving directory /home/wenchenaafc/jellyfish-1.1.11' make[1]: * [check-TESTS] Error 2 make[1]: Leaving directory/home/wenchenaafc/jellyfish-1.1.11' make: *\ [check-am] Error 2
Can you please help me in resolving this error? Thanks in advance.
Cheers, Ram
— Reply to this email directly or view it on GitHub https://github.com/gmarcais/Jellyfish/issues/32.
Ramanandan
Dear Guillaume Marcais,
I am Ram, I have recently started to work on metagenomics analysis. I would like to thank you and your research team for coming up with a wonderful application for microbial community.
I have installed the latest version of JELLYFISH 1.1.11. from this url (http://www.cbcb.umd.edu/software/jellyfish/). I followed the instructions mentioned in the readme file. After the installation steps, I performed 2 different tests.
1) To run the built-in tests. This test was successful. All the tests were pass except one tests/big.sh was skipped. 2) To tests on large dataset. In this test one failed (tests/big.sh). Remaining 19 tests were pass.
I have pasted the error for your reference.
1 of 20 tests failed See ./test-suite.log
Please report to gmarcais@umd.edu
make[2]: * [test-suite.log] Error 1 make[2]: Leaving directory `/home/wenchenaafc/jellyfish-1.1.11' make[1]: * [check-TESTS] Error 2 make[1]: Leaving directory`/home/wenchenaafc/jellyfish-1.1.11' make: *\ [check-am] Error 2
Can you please help me in resolving this error? Thanks in advance.
Cheers, Ram