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gmarcais
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Jellyfish
A fast multi-threaded k-mer counter
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Fails to build from source on arm64/ppc64el: tests/generate_sequence
#109
mr-c
opened
6 years ago
7
tests/small_mers.sh missing from v2.2.8
#108
mr-c
closed
6 years ago
2
Make error while installing
#107
ashaneev
closed
6 years ago
3
Help: Jellyfish Configurations
#106
taranglute
closed
6 years ago
1
Is it possible to output the source of reads of each kmer
#105
bzvew
opened
6 years ago
1
jellyfish count database format
#104
rfm-targa
closed
6 years ago
2
one command to count/histo/stats without outputting the big mer_counts.jf file
#103
wangyugui
opened
6 years ago
0
Cannot make jellyfish-2.2.7
#102
StefanReuscher
opened
6 years ago
3
errors in cygwin installation
#101
metzgerm
closed
6 years ago
3
cannot install on mac OS El capitan
#100
proukakis
opened
6 years ago
5
Cannot make files successfully on the cygwin ('posix_memalign' was not declared in this scope)
#99
ryshjx
closed
6 years ago
3
Will Jellyfish support protein sequences?
#98
aziele
opened
7 years ago
1
Is there a way to build jellyfish statically linking libraries?
#97
jregalad
closed
7 years ago
2
Jellyfish crashes and dumps core if input file is missing (Ubuntu and Mac OS X)
#96
Valiec
opened
7 years ago
0
Jellyfish stalling when counting 7, 8 mers on large files
#95
cjfiscus
closed
6 years ago
14
Run Jellyfish with computing farm (Cluster)
#94
patrick-douglas
opened
7 years ago
0
numeric parsing treats empty string as legit zero (ought to be an error?)
#93
rsharris
closed
7 years ago
1
How to remove jellyfish 2 from my machine?
#92
falkomathes
closed
6 years ago
1
bloom_filter unit test fails
#91
rsharris
closed
7 years ago
3
make: missing aclocal
#90
ondovb
closed
7 years ago
2
Failed to open input file 'mer_counts.jf1021'
#89
kseniaarkhipova
opened
7 years ago
2
mask fastq/fasta based on low coverage kmer?
#88
wangyugui
closed
6 years ago
6
2.2.6: make: *** No rule to make target 'false', needed by 'sub_commands/count_main_cmdline.hpp'. Stop.
#87
mmokrejs
closed
6 years ago
7
jellyfish genes
#86
dridk
opened
7 years ago
0
Jellyfish stalls of a multi-CPU server
#85
roussine
opened
7 years ago
0
epic-effective cannot find jellyfish
#84
IanCodes
closed
7 years ago
1
Source Package has no Configure Script
#83
ttbek
opened
7 years ago
6
using jellyfish to estimate genome size in MaSuRCA assembler
#82
danshu
opened
7 years ago
0
Memory Allocation / Core Dump
#81
greenstick
closed
7 years ago
3
Modified configure.ac to test for SSE properly, var sets arg default …
#80
dmiller423
closed
9 months ago
0
Use of very large kmers
#79
maplesond
opened
7 years ago
0
can't install update
#78
Mobean
closed
7 years ago
2
No configure file in the source code?
#77
chjiao
closed
7 years ago
2
More complicated queries from within python code
#76
lfaller
opened
7 years ago
0
Loading/building hash table from disk
#75
dnbaker
opened
7 years ago
0
Won't compile with python bindings enabled
#74
ghost
closed
7 years ago
5
Either option -s or --if is required [feature request]
#73
sjackman
opened
7 years ago
0
Specify the hash size in either scientific notation or SI notation [feature request]
#72
sjackman
closed
6 years ago
1
Clarify that the initial hash size is in bytes
#71
sjackman
closed
9 months ago
0
Fix a typo: Change peath to path
#70
sjackman
closed
9 months ago
2
Python module has name space conflict with jellyfish
#69
tillea
closed
6 years ago
2
[CR] Update ax_ext.m4
#68
rafaeldelucena
closed
6 years ago
7
Add auto detection for SSE #64
#67
rafaeldelucena
closed
8 years ago
0
Auto detect SSE
#66
rafaeldelucena
closed
8 years ago
0
ppc64le: Unit test fails erroneously
#65
jlost
closed
10 months ago
10
ppc64le: Infer --without-sse on configure
#64
jlost
closed
6 years ago
30
Fails compile on POWER8: rectangular_binary_matrix.hpp impossible register constraint in 'asm'
#63
jlost
opened
8 years ago
10
Wrong dynamic library names for SWIG integration on Mac OS X
#62
culpinnis
opened
8 years ago
3
Error libjellyfish-2.0.so.2
#61
moneterg
opened
8 years ago
3
Jellyfish python bindings don't support fasta or specify what format they do support
#60
MatthewRalston
opened
8 years ago
3
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