Difference between Gasv and GasvPro

[GoogleCodeExporter]

Hello,

I would like to use your software, but I don't know which version to use, 
whether Gasv or GasvPro?

Thanks!

Original issue reported on code.google.com by roal...@gmail.com on 27 Jun 2012 at 9:04

[GoogleCodeExporter]

Thank you for your question and interest in our software.

I have made some updates to our documentation and webpage to clarify the 
workflow of our software. As described on the updated version of the Project 
Homepage, our software consists of three parts which are run in succession:

(1) BAMToGASV: Process a BAM file to create input files for GASV.

(2) GASV: Clusters discordant mappings and predicts SVs.

(3) GASVPro: An independent probabilistic model which processes GASV 
predictions to improve specificity by integrating the read-depth signal.

So, in order to use GASVPro you would first need to run GASV. The output of 
GASVPro is the set of variants (from the list of GASV predictions) with highest 
likelihood of being a true variant. 

If you are interested in more information on GASVPro, please refer to our 
manuscript:

http://genomebiology.com/2012/13/3/R22/abstract 

and current distribution of GASVPro

http://gasv.googlecode.com/files/GASVProVersion0.9.tar.gz

Please let us know if this addresses your query and if you have any other 
further questions. You can also email our development team at gasv@cs.brown.edu.

Thanks!

Original comment by sora...@gmail.com on 27 Jun 2012 at 8:23

[GoogleCodeExporter]

Original comment by sora...@gmail.com on 27 Jun 2012 at 8:26

• Changed state: Done