Open chagas98 opened 2 years ago
Can you give me an accession or a gbk file which causes this issue please?
I read the gbk files with python functions. It was tricky to integrate with other R parts. Some solutions to plasmids might be useful in the future. Thanks in advance @gmbecker
@chagas98 can you please try with the latest commit here? locally I'm getting no errors for this file:
> thing <- readGenBank("~/gabe/checkedout/genbankr_gh/inst/unitTests/petm20.gbk")
Annotations don't have 'locus_tag' label, using 'gene' as gene_id column
genes not available for all CDS ranges, using internal grouping ids
No exons read from genbank file. Assuming sections of CDS are full exons
No transcript features (mRNA) found, using spans of CDSs
> thing
GenBank Annotations
synthetic circular DNA
Accession: .
1 Sequence(s) with total length length: 7700
0 genes
9 transcripts
9 exons/cds elements
0 variations
10 other features
I am trying to read plasmid sequences from different sources and still getting this error: