Closed sborstein closed 1 year ago
This should be fixed in version 1.27.1, which I just pushed both here and to the bioconductor git repo. So the devel version available through bioc should reflect the change after the next build cycle. Please give it a try and confirm it works for you.
I installed from GitHub via devtools and it is seperating the D-loop from the tRNAs and providing the ranges. Thanks for pushing out the fix!
Hi, Thanks for your work on genbankr, it is a really useful tool. I am looking at using genbankr as a dependency for a package I am developing. I'm currently trying to extract the mitochondrial D-loop from mitochondrial genomes using the
otherFeatures
function. However, it seems to be behaving oddly in that the D-loop annotation is being combined with the annotations for the tRNA preceeding it and it not returning the range for the D-loop, just the range for the tRNA. I've provided an example below in which you can see the issue in the last line of theotherFeatures
output :I have tried this with a number of mitochondrial genomes (
MZ646791.1
,MT437356.1
,LC627429.1
in addition to others ) with D-loop annotations, all of thich behaved similarly. Is it possible to get this corrected so both the tRNA and the D-loop annotation and ranges are accessible through genbankr?Thanks, -Sam Borstein