gmbecker / genbankr

http://bioconductor.org/packages/devel/bioc/html/genbankr.html
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Read error when input contains more than one sequence objects #23

Open gaospecial opened 1 year ago

gaospecial commented 1 year ago

Some bacteria has more than one sequence objects, which may be a chromosome and several plasmids. For instance, https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/865/GCF_000008865.2_ASM886v2/.

I found readGenBank() failed when read the GenBank file. When I just keep one sequence in the file, it worked.

Since GenBank format is designed with the capacity of storing multiple sequences, I believe this is a bug.