Open nilsj9 opened 4 years ago
Hi @gmbecker , hi @nilsj9
I have the first of the issues with a bunch of human RefSeq identifiers, e.g.:
genbankr::readGenBank(genbankr::GBAccession("NM_000494"))
Annotations don't have 'locus_tag' label, using 'gene' as gene_id column
Annotations don't have 'locus_tag' label, using 'gene' as gene_id column
Error in `[[<-`(`*tmp*`, name, value = c("COL17A1.1", "COL17A1.1", "COL17A1.1", :
53 elements in value to replace 56 elements
It originates from genbankReader.R, line 873. Works when replacing with:
exns$transcript_id = cdss$transcript_id
Hi @gmbecker , currently I am attempting to parse a bunch of plastid genome records using genbankr. Thereby I am encountering recurring error messages and wonder wheter it is caused by a bug in genbankr or by wrong formatted GenBank Flat files. In the following I am listing three frequent error messages:
I would be very grateful if you could help me fix these problems. Thank you in advance and best wishes.