Open DelaFuenteJavier opened 4 years ago
Hi to all. My intention is to import a GBK file in order to create a TxDb object. The GBK file is the following one: myfile.txt but ending in .gbk instead of .txt This file is annotated with prokka 1.14-dev
So what i do is the following:
smpfile <- system.file("mypath/myfile.gbk", package="genbankr",mustWork = TRUE) gb<- readGenBank(smpfile) tx <- makeTxDbFromGenBank(gb)
But when I try to create the smpfile I get the following msg: "Error in system.file("mypath/myfile.gbk", : no file found "
I first thought the problem was in my GBK file but I downloaded other gbk files and it still does not work.
Do you have any clue about what's going on?
I'm pretty new in R so sorry in advance!
Hi to all. My intention is to import a GBK file in order to create a TxDb object. The GBK file is the following one: myfile.txt but ending in .gbk instead of .txt This file is annotated with prokka 1.14-dev
So what i do is the following:
smpfile <- system.file("mypath/myfile.gbk", package="genbankr",mustWork = TRUE) gb<- readGenBank(smpfile) tx <- makeTxDbFromGenBank(gb)
But when I try to create the smpfile I get the following msg: "Error in system.file("mypath/myfile.gbk", : no file found "
I first thought the problem was in my GBK file but I downloaded other gbk files and it still does not work.
Do you have any clue about what's going on?
I'm pretty new in R so sorry in advance!