A set of tools to help bioinformaticians, clinicians and biostatisticians to design, analyze and finalize a custom gene panel for clinical trial in cancer genomics.
Some SNV mutations downloaded from cBioportal are mapped on chr23 (instead of X or Y). The current implementation of filterMutations generates an error if chr23 is provided in the input bed data.frame. This correction adds chr23 as a possible "chr" value in dataframe input to the function.
Some SNV mutations downloaded from cBioportal are mapped on chr23 (instead of X or Y). The current implementation of filterMutations generates an error if chr23 is provided in the input bed data.frame. This correction adds chr23 as a possible "chr" value in dataframe input to the function.