gmgitx
commented
5 years ago awk '$1>2 && $2=="Are" {print $1,$2,$3}'
5 toid=(awk '$1 == "${ID}" {print $2}' refer.txt)
6 #toid=(awk '/'${ID}'/{print $2}' refer.txt)
awk '/\y2010TJ\y/' file
4 echo "$ID"
5 #nline=(awk '/'${ID}'/{print NR}' refer1.txt);
6 #echo "$nline"
7 toid=(awk '/\y'${ID}'\y/{print $2}' refer.txt)
8 #toid=(awk 'NR=="${nline}"{print}' refer2.txt);
9 #toid=(awk '$1 == "${ID}" {print $2}' refer.txt)
10 #toid=(awk '/'${ID}'/{print $2}' refer.txt)
11 echo "$toid"
12 #mv $file ${toid}.fq.gz
13 done
do
ID=echo $file | cut -d '/' -f8 | awk -F'_L' '{print $1}';
nline=(awk '/'${ID}'/{print NR}' refer1.txt);
toid=(awk 'NR=='${nline}'{print}' refer2.txt);
mv $file $toid.fq.gz
done
...
do
ID=echo $file | cut -d '/' -f8 | awk -F'_L' '{print $1}';
echo "$ID"
toid=(awk '/\y'${ID}'\y/{print $2}' refer.txt)
echo "$toid"
mv $file ${toid}.fq.gz
done
16