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gnn4dr / DRKG

A knowledge graph and a set of tools for drug repurposing
Apache License 2.0
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Need entity names for the ids in the DRKG graph #28

Open kapeed1011 opened 2 years ago

kapeed1011 commented 2 years ago

Hi

The graph available in the DRKG repository containing 5,874,261 triplets has ids for identifying compounds and diseases. Please find this sample from the main graph dataset.

Sample from graph: Compound::DB01586 GNBR::T::Compound:Disease Disease::MESH:C535932 Compound::DB01586 GNBR::T::Compound:Disease Disease::MESH:D002779 Compound::DB01586 GNBR::Pa::Compound:Disease Disease::MESH:D007674

Ideal data format needed: Ursodeoxycholic acid GNBR::T::Compound:Disease Cholestasis of pregnancy Ursodeoxycholic acid GNBR::T::Compound:Disease Cholestasis Ursodeoxycholic acid GNBR::Pa::Compound:Disease Kidney Diseases

Is there any automated way through which we can get the names for these ids ? Any help in this direction will be appreciated.

ishaan-mehta commented 2 years ago

If you are familiar with using APIs, you should be able to do so by using the National Library of Medicine's tool here