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gobics / uproc

Tools for ultra-fast protein sequence classification.
http://uproc.gobics.de/
GNU Lesser General Public License v3.0
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No descriptions for KO terms #19

Open mdehollander opened 8 years ago

mdehollander commented 8 years ago

Hi,

I noticed that some KO hits against KEGG with uproc-prot are not in the current KEGG database. For example look at http://www.genome.jp/dbget-bin/www_bget?ko:K16239. The current KEGG database is Release 77.0+/01-04, Jan 16 (http://rest.kegg.jp/info/orthology) while the version of KEGG shipped with uproc is from March 2014. Here are some more KO ids without a hit in the current KEGG database:

 'K01618',
 'K01632',
 'K01636',
 'K01726',
 'K01780',
 'K01797',
 'K01828',
 'K01913',
 'K01932',
 'K01976',
 'K03384',
 'K03423',

It is possible to provide a list with KO descriptions like here: http://rest.kegg.jp/list/orthology/ that works with the uproc release? Or otherwise update the uproc database?

Thanks!