Add better default channel colors to rename_tiff_channels

goeckslab / tools-mti

MIT License

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Add better default channel colors to rename_tiff_channels #61

Closed CameronFRWatson closed 3 months ago

CameronFRWatson commented 7 months ago

ome-types adds a default channel color of -1 ([255,255,255]) to the OME XML metadata that overrides Viv's defaults. Need to add a better default color assignment in tools/mti-utils/rename_tiff_channels.xml. Likely will just specify RGB values for 10 colors and loop through for all channels in image

CameronFRWatson commented 3 months ago

Adressed in https://github.com/goeckslab/tools-mti/pull/82