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gongx030 / ensemblemerge

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BBKNN error on colab #45

Open gongx030 opened 2 years ago

gongx030 commented 2 years ago 
params_merge <- new('BBKNNMerge', normalize = params_normalize)
x_merged <- Merge(x, params_merge) # x_merged is a Seurat object

have the following error:

Python  package leidenalg must have version >= 0.8.8

Error in py_call_impl(callable, dots$args, dots$keywords): ValueError: X_pca does not have enough Dimensions. Provide a Representation with equal or more dimensions than`n_pcs` or lower `n_pcs` 

Detailed traceback:
  File "/usr/local/lib/python3.7/dist-packages/scanpy/tools/_umap.py", line 187, in umap
    silent=True,
  File "/usr/local/lib/python3.7/dist-packages/scanpy/tools/_utils.py", line 53, in _choose_representation
    f'{use_rep} does not have enough Dimensions. Provide a '

Traceback:

1. Merge(x, params_merge)
2. Merge(x, params_merge)
3. sc$tl$umap(adata)
4. py_call_impl(callable, dots$args, dots$keywords)
dsouz072 commented 2 years ago

@gongx030

I am getting the exact same error for BBKNN while working with ensemblemerge Version Tag v2.1.23-001

dsouz072 commented 2 years ago

The exact same BBKNN error occurs with ensemblemerge v2.1.24-001