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gonum / hdf5

hdf5 is a wrapper for the HDF5 library
BSD 3-Clause "New" or "Revised" License
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cmd/test*: fail with error while loading shared libraries: libhdf5_serial.so.10: cannot open shared object file: No such file or directory #55

Open kortschak opened 4 years ago

kortschak commented 4 years ago

What are you trying to do?

Run tests.

What did you do?

git checkout 847297cb569e6bb5d2ef9248b222eb4d8d40bd2d
GODEBUG=cgocheck=0 go test ./...

What did you expect to happen?

Successful test completion.

What actually happened?

$ GODEBUG=cgocheck=0 go test ./...
ok      gonum.org/v1/hdf5   (cached)
--- FAIL: TestCpxCmpd (0.00s)
    main_test.go:24: error: exit status 127
        test-go-cpxcmpd: error while loading shared libraries: libhdf5_serial.so.10: cannot open shared object file: No such file or directory

FAIL
FAIL    gonum.org/v1/hdf5/cmd/test-go-cpxcmpd   0.004s
?       gonum.org/v1/hdf5/cmd/test-go-extend-ds [no test files]
?       gonum.org/v1/hdf5/cmd/test-go-hdf5  [no test files]
--- FAIL: TestTableRWCmd (0.00s)
    main_test.go:25: error: exit status 127
        test-go-table-01: error while loading shared libraries: libhdf5_serial.so.10: cannot open shared object file: No such file or directory

FAIL
FAIL    gonum.org/v1/hdf5/cmd/test-go-table-01  0.004s
?       gonum.org/v1/hdf5/cmd/test-go-table-01-readback [no test files]
ok      gonum.org/v1/hdf5/cmem  (cached)
FAIL

What version of Go, Gonum, Gonum/netlib and libhdf5 are you using?

Gonum: 1d8f8b2ee4cec2e174d8abadec9339ec4961b303 HDF5: 847297cb569e6bb5d2ef9248b222eb4d8d40bd2d Go version: go version go1.13 linux/amd64

Does this issue reproduce with the current master?

Yes

Additional information

The system-wide install provides a libhdf5_serial.so.100.0.1.

$ dpkg -L libhdf5-100 
/.
/usr
/usr/lib
/usr/lib/x86_64-linux-gnu
/usr/lib/x86_64-linux-gnu/libhdf5_serial.so.100.0.1
/usr/lib/x86_64-linux-gnu/libhdf5_serial_fortran.so.100.0.1
/usr/lib/x86_64-linux-gnu/libhdf5_serial_hl.so.100.0.0
/usr/lib/x86_64-linux-gnu/libhdf5_serialhl_fortran.so.100.0.0
/usr/share
/usr/share/doc
/usr/share/doc/libhdf5-100
/usr/share/doc/libhdf5-100/changelog.Debian.gz
/usr/share/doc/libhdf5-100/copyright
/usr/share/lintian
/usr/share/lintian/overrides
/usr/share/lintian/overrides/libhdf5-100
/usr/lib/x86_64-linux-gnu/libhdf5_serial.so.100
/usr/lib/x86_64-linux-gnu/libhdf5_serial_fortran.so.100
/usr/lib/x86_64-linux-gnu/libhdf5_serial_hl.so.100
/usr/lib/x86_64-linux-gnu/libhdf5_serialhl_fortran.so.100
/usr/share/doc/libhdf5-100/RELEASE.txt.gz