search

goodarzilab / pypage

python implementation of the PAGE algorithm
MIT License
15 stars 2 forks source link

2 implement histogram binning on expression profile #22

Closed noamteyssier closed 2 years ago

noamteyssier commented 2 years ago

Implement two different binning strategies onto a continuous expression profile.

  1. histogram binning: unequal sized groups but of more similar values
  2. split binning: equal sized groups but of more unequal values.

Also changed input requirement from a dataframe to two vectors (gene and continuous score / discrete bin).

close #2 close #4