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goodarzilab / pypage

python implementation of the PAGE algorithm
MIT License
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New discretization function #39

Open artemy-bakulin opened 2 years ago

artemy-bakulin commented 2 years ago

Replaced the old discretization functions with a new one which is more concise and slightly more effective. Done with a 6cc934d commit.

I have tested this new function against the old methods using simulated data. The results are as follows: | split | hist | discretize (new function) TNR | 0.93| 0.92 | 0.93 TPR | 0.91 | 0.92 | 0.92

Also changed the order of discretization. Now the expression is discretized after the subsetting.

Added raw_expression attribute which contains unprocessed expression, which is used for subsetting and also in future will be used for estimating the regulator's expression in heatmaps.

artemy-bakulin commented 2 years ago

Fixed problems with "repr" in ExpressionProfile class

59e69e8

artemy-bakulin commented 2 years ago

Then I edited test_run.py in cefa39b

artemy-bakulin commented 2 years ago

Then edited test_expression.py in 4473b4f