Going forward, the next version of pseudo-it will be implemented mostly as a snakemake workflow with a small Python interface to handle user options and config file generation. This will improve checkpointing, resource allocation, and ease of use. The snakemake version should also be built to accommodate multiple libraries. Along with these new features, this implementation will likely render other issues (e.g. #3 and #5) moot.
Going forward, the next version of
pseudo-itwill be implemented mostly as a snakemake workflow with a small Python interface to handle user options and config file generation. This will improve checkpointing, resource allocation, and ease of use. The snakemake version should also be built to accommodate multiple libraries. Along with these new features, this implementation will likely render other issues (e.g. #3 and #5) moot.