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goodwright / clipseq

The primary analysis pipeline for CLIP samples.
MIT License
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Is `test_full` working? #11

Open tbrittoborges opened 1 year ago

tbrittoborges commented 1 year ago

While testing this workflow with our Slurm cluster (with singularity) I could not get the test_full to work due to missing file error.

Both test,singularity and test_no_prep_genome,singularity worked without issues. I wonder if the problem is with the missing file or a local.

Error:

 nextflow run main.nf -profile test_full,singularity

 ...
 No such file: s3://nf-core-awsmegatests/clipseq/input_data/reference/GRCh38.primary_assembly.genome.fa.gz

(2).nextflow.log

CharlotteAnne commented 1 year ago

Hi, yes nf-core have changed their AWS paths, I'll go in and fix this now and push to master branch, will post when it's completed and I've tested. Sorry for the delay in getting back to you.