Bad char for parser

[GoogleCodeExporter]

Chris please encapsulate this bad character in a comment block so the parser 
succeeds for the NOEs.

Doing entry 2k2u 3901
Get the MR file_id from the pdb code and detail value.
Trying to convert block: 0 of type: MR format, comment, n/a, n/a
Trying to convert block: 1 of type: XPLOR/CNS, distance, NOE, simple
ERROR:
Wattos.Converters.Xplor.TokenMgrError: Lexical error at line 1086, column 84.  
Encountered: "\u2020" (8224), after : ""
        at Wattos.Converters.Xplor.XplorParserAllTokenManager.getNextToken(XplorParserAllTokenManager.java:1179)
        at Wattos.Converters.Xplor.XplorParserAll.getToken(XplorParserAll.java:1067)
        at Wattos.Converters.Xplor.Utils.error_skipto(Utils.java:124)
        at Wattos.Converters.Xplor.XplorParserAll.error_skipto(XplorParserAll.java:945)
        at Wattos.Converters.Xplor.XplorParserAll.AssiStateDistance(XplorParserAll.java:250)
        at Wattos.Converters.Xplor.XplorParserAll.AssiListDistance(XplorParserAll.java:181)

Original issue reported on code.google.com by jurge...@gmail.com on 26 Mar 2009 at 8:55

[GoogleCodeExporter]

Same for 2i7e:

Doing entry 2i7e 3371
Get the MR file_id from the pdb code and detail value.
Trying to convert block: 0 of type: MR format, comment, n/a, n/a
Trying to convert block: 1 of type: n/a, comment, n/a, n/a
Trying to convert block: 2 of type: XPLOR/CNS, distance, NOE, simple
input16517.tmp       1403  325 1403

ERROR: please check the input. An error was recorded.
Trying to convert block: 3 of type: XPLOR/CNS, distance, general distance, 
simple
input16518.tmp         88    4   89

ERROR: please check the input. An error was recorded.
Trying to convert block: 4 of type: XPLOR/CNS, distance, hydrogen bond, simple
input16519.tmp        198   11  199

ERROR: please check the input. An error was recorded.
Trying to convert block: 5 of type: XPLOR/CNS, dihedral angle, n/a, n/a
input16520.tmp          0  401  559

ERROR: please check the input. An error was recorded.
Trying to convert block: 6 of type: XPLOR/CNS, planarity, n/a, n/a
Skipping block: 6
Trying to convert block: 7 of type: n/a, comment, n/a, n/a
Trying to convert block: 8 of type: XPLOR/CNS, dipolar coupling, n/a, n/a
ERROR:
Wattos.Converters.Xplor.TokenMgrError: Lexical error at line 175, column 1.  
Encountered: "}" (125), after : ""
        at Wattos.Converters.Xplor.XplorParserAllTokenManager.getNextToken(XplorParserAllTokenManager.java:1179)
        at Wattos.Converters.Xplor.XplorParserAll.getToken(XplorParserAll.java:1067)
        at Wattos.Converters.Xplor.Utils.error_skipto(Utils.java:124)
        at Wattos.Converters.Xplor.XplorParserAll.error_skipto(XplorParserAll.java:945)
        at Wattos.Converters.Xplor.XplorParserAll.AssiStateDipolarCoupling(XplorParserAll.java:338)
        at Wattos.Converters.Xplor.XplorParserAll.AssiListDipolarCoupling(XplorParserAll.java:193)

Original comment by jurge...@gmail.com on 26 Mar 2009 at 8:57

[GoogleCodeExporter]

and the last one of this type is:
I hope but am not certain you can fix all 3.

Doing entry 2fqa 3103
Get the MR file_id from the pdb code and detail value.
Trying to convert block: 0 of type: MR format, comment, n/a, n/a
Trying to convert block: 1 of type: XPLOR/CNS, distance, NOE, simple
input15273.tmp        184    0    0

Trying to convert block: 2 of type: XPLOR/CNS, distance, hydrogen bond, simple
ERROR:
Wattos.Converters.Xplor.TokenMgrError: Lexical error at line 7, column 1.  
Encountered: "}" (125), after : ""
        at Wattos.Converters.Xplor.XplorParserAllTokenManager.getNextToken(XplorParserAllTokenManager.java:1179)
        at Wattos.Converters.Xplor.XplorParserAll.jj_ntk(XplorParserAll.java:1074)
        at Wattos.Converters.Xplor.XplorParserAll.AssiStateDistance(XplorParserAll.java:217)
        at Wattos.Converters.Xplor.XplorParserAll.AssiListDistance(XplorParserAll.java:181)

Original comment by jurge...@gmail.com on 26 Mar 2009 at 8:59

[GoogleCodeExporter]

2k2u - this had an invisible character that was no where near line 1086

2i7e - all line endings were \par.  Tabs were \tab - lots of errors. I took out 
the '}' though.

2fqa - straight forward fix.

we are rerunning weekly

Original comment by schulte....@gmail.com on 26 Mar 2009 at 4:04

[GoogleCodeExporter]

Successful weeklyDOCR_FRED run

Original comment by schulte....@gmail.com on 27 Mar 2009 at 1:22

• Changed state: Fixed