What steps will reproduce the problem?
1. Running FC on entry
What is the expected output? What do you see instead?
Traceback (most recent call last):
File "/raid/docr/workspace/recoord/python/recoord2/msd/linkNmrStarData.py", line 683, in <module>
LinkNmrStarData(sys.argv)
File "/raid/docr/workspace/ccpn/python/msd/adatah/Generic.py", line 87, in __init__
self.catchError(raiseError,timeFlag)
File "/raid/docr/workspace/ccpn/python/msd/adatah/Generic.py", line 80, in __init__
self.runSpecific()
File "/raid/docr/workspace/recoord/python/recoord2/msd/linkNmrStarData.py", line 169, in runSpecific
self.readNmrStarFile(inNmrStarFile, version = self.originalNmrStarVersion, maxNum = self.numModelsToRead, autoCreateChemComps = True)
File "/raid/docr/workspace/ccpn/python/msd/adatah/NmrStar.py", line 37, in readNmrStarFile
self.formatObjectDict[formatKey].readProject(nmrStarFile, entry = self.entry, molSystem = self.molSystem, strucGen = self.strucGen, useOriginalChainCode = True,
linkAtoms = False, version = version, chemCompPath = chemCompArchiveDataDir,
minimalPrompts = 1, **localKeywds)
File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 946, in readProject
self.getFullProject(fileName,**keywds)
File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/NmrStarFormat.py", line 585, in getFullProject
self.readDistanceConstraints(strucGen = strucGen, minimalPrompts = self.minimalPrompts, version = self.version)
File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 2938, in readDistanceConstraints
return self.readConstraints(*args, **keywds)
File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 3153, in readConstraints
self.setConstraints()
File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 10139, in setConstraints
self.setTypeConstraint()
File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 10295, in setDistanceTypeConstraint
self.setDistanceConstraintPars()
File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 10316, in setDistanceConstraintPars
self.setDistanceConstraintLimits()
File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/NmrStarFormat.py", line 2806, in setDistanceConstraintLimits
self.constraintPars['upperLimit'] = self.rawConstraintNode.upperBound
AttributeError: NmrStarDistanceConstraintItem instance has no attribute
'upperBound'
Most likely Wattos didn't provide the data but did FC become more sensitive to
that?
Original issue reported on code.google.com by jurge...@gmail.com on 11 Dec 2009 at 3:17
Original issue reported on code.google.com by
jurge...@gmail.com
on 11 Dec 2009 at 3:17