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FC more sensitive about missing data? #239

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
What steps will reproduce the problem?
1. Running FC on entry

What is the expected output? What do you see instead?
Traceback (most recent call last):
  File "/raid/docr/workspace/recoord/python/recoord2/msd/linkNmrStarData.py", line 683, in <module>
    LinkNmrStarData(sys.argv)
  File "/raid/docr/workspace/ccpn/python/msd/adatah/Generic.py", line 87, in __init__
    self.catchError(raiseError,timeFlag)
  File "/raid/docr/workspace/ccpn/python/msd/adatah/Generic.py", line 80, in __init__
    self.runSpecific()
  File "/raid/docr/workspace/recoord/python/recoord2/msd/linkNmrStarData.py", line 169, in runSpecific
    self.readNmrStarFile(inNmrStarFile, version = self.originalNmrStarVersion, maxNum = self.numModelsToRead, autoCreateChemComps = True)
  File "/raid/docr/workspace/ccpn/python/msd/adatah/NmrStar.py", line 37, in readNmrStarFile
    self.formatObjectDict[formatKey].readProject(nmrStarFile, entry = self.entry, molSystem = self.molSystem, strucGen = self.strucGen, useOriginalChainCode = True, 
linkAtoms = False, version = version, chemCompPath = chemCompArchiveDataDir, 
minimalPrompts = 1, **localKeywds)
  File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 946, in readProject
    self.getFullProject(fileName,**keywds)
  File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/NmrStarFormat.py", line 585, in getFullProject
    self.readDistanceConstraints(strucGen = strucGen, minimalPrompts = self.minimalPrompts, version = self.version)
  File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 2938, in readDistanceConstraints
    return self.readConstraints(*args, **keywds)
  File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 3153, in readConstraints
    self.setConstraints()
  File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 10139, in setConstraints
    self.setTypeConstraint()
  File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 10295, in setDistanceTypeConstraint
    self.setDistanceConstraintPars()
  File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/DataFormat.py", line 10316, in setDistanceConstraintPars
    self.setDistanceConstraintLimits()
  File "/raid/docr/workspace/ccpn/python/ccpnmr/format/converters/NmrStarFormat.py", line 2806, in setDistanceConstraintLimits
    self.constraintPars['upperLimit'] = self.rawConstraintNode.upperBound
AttributeError: NmrStarDistanceConstraintItem instance has no attribute 
'upperBound'

Most likely Wattos didn't provide the data but did FC become more sensitive to 
that?

Original issue reported on code.google.com by jurge...@gmail.com on 11 Dec 2009 at 3:17

GoogleCodeExporter commented 9 years ago
Should be fixed by 246. No problem.

Original comment by jurge...@gmail.com on 22 Sep 2010 at 7:15