google-code-export / peptide-shaker

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Peptide shaker is not accepting my custom database #22

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
> What steps will reproduce the problem?
1.Searchgui seems to accepts my database file 

2.peptide shaker seems not to like my database file (see attached)

> What is the expected output? What do you see instead?
please see attached for details

> What version of the product are you using? On what operating system?

v0.19.0
> Please provide any additional information below.
I have attached the error report i am getting.
I suspect that my db is not in the format acceptable by peptide shaker. If so, 
how do I solve the problem? Could it be because my database headings are 
non-standard? Is there any program in place that can automatically make it 
acceptable for PeptideShaker?
Warm regards,
Ryman

> If the reported issue resulted in the tool crashing, please
> also upload the file called PeptideShaker.log (found in the
> PeptideShaker-X.Y.Z\conf folder).

Original issue reported on code.google.com by shoko.ry...@gmail.com on 20 Feb 2013 at 12:59

Attachments:

GoogleCodeExporter commented 9 years ago
[deleted comment]
GoogleCodeExporter commented 9 years ago
Please ignore this issue. I have had the problem solved elsewhere!

Original comment by shoko.ry...@gmail.com on 20 Feb 2013 at 3:53

GoogleCodeExporter commented 9 years ago
[deleted comment]
GoogleCodeExporter commented 9 years ago
Hello Ryman Shoko....I had the same problem with my custom database, Could you 
help me? What did you do for solving this issue?... Thanks for the help...

Original comment by iapa...@gmail.com on 6 Mar 2013 at 8:03

GoogleCodeExporter commented 9 years ago
For database help, please see: 
http://code.google.com/p/searchgui/wiki/DatabaseHelp.

Original comment by harald.b...@gmail.com on 11 Mar 2013 at 11:01