OMSSA results import prpoblem

Dear all,
I experienced a problem with OMSSA data import into Peptide-shaker.
I used an home-made DB that work properly with xtandem. The search with OMSSA 
works fine but Peptide-shaker is unable to import the data.

Here you have the Peptide-shaker.log:

Thu Nov 21 14:22:06 CET 2013: PeptideShaker version 0.22.6.

Total amount of memory in the Java virtual machine: 129761280.

Java version: 1.7.0_25.

java.lang.IllegalArgumentException: Protein not found: BL_ORD_ID:158089.
    at com.compomics.util.experiment.identification.SequenceFactory.getProtein(SequenceFactory.java:180)
    at com.compomics.util.experiment.identification.SequenceFactory.getProtein(SequenceFactory.java:178)
    at com.compomics.util.experiment.identification.SequenceFactory.getProtein(SequenceFactory.java:140)
    at eu.isas.peptideshaker.PeptideShaker.cleanProteinGroups(PeptideShaker.java:2389)
    at eu.isas.peptideshaker.PeptideShaker.processIdentifications(PeptideShaker.java:339)
    at eu.isas.peptideshaker.fileimport.FileImporter$IdProcessorFromFile.importFiles(FileImporter.java:574)
    at eu.isas.peptideshaker.fileimport.FileImporter.importFiles(FileImporter.java:153)
    at eu.isas.peptideshaker.PeptideShaker.importFiles(PeptideShaker.java:217)
    at eu.isas.peptideshaker.cmd.PeptideShakerCLI.createProject(PeptideShakerCLI.java:363)
    at eu.isas.peptideshaker.cmd.PeptideShakerCLI.call(PeptideShakerCLI.java:124)
    at eu.isas.peptideshaker.cmd.PeptideShakerCLI.main(PeptideShakerCLI.java:635)
Free memory: 67857832

I'm using OsX.

Original issue reported on code.google.com by marpe...@gmail.com on 21 Nov 2013 at 2:09

google-code-export / peptide-shaker

OMSSA results import prpoblem #34