Peptideshaker eorror when importing fasta database file

[GoogleCodeExporter]

> What steps will reproduce the problem?
When building new project, importing fasta database file failed.

> What is the expected output? What do you see instead?
Peptideshaker canceled protein sequences importing.

> What version of the product are you using? On what operating system?
PeptideShaker 0.26, windows 7 64bit.

> Please provide any additional information below.
log file information:
Jmol Version: 12.0.43  2011-05-03 14:21
java.vendor: Oracle Corporation
java.version: 1.7.0_40
os.name: Windows 7
memory: 31.3/129.8
processors available: 8
useCommandThread: false
Reindexing: Uniprot_MOUSE_iRT_20130626_concatenated_target_decoy.fasta. 
(Reason: com.compomics.util.experiment.identification.FastaIndex; local class 
incompatible: stream classdesc serialVersionUID = -5858706212745992648, local 
class serialVersionUID = 1089704887553927736)
Reindexing: Uniprot_MOUSE_iRT_20130626_concatenated_target_decoy.fasta.
An error occured while loading 
C:\SearchGUI-1.14.4\resources\database\Uniprot_MOUSE_iRT_20130626_concatenated_t
arget_decoy.fasta.
java.lang.NullPointerException
    at com.compomics.util.db.ObjectsDB.correctKey(ObjectsDB.java:1048)
    at com.compomics.util.db.ObjectsDB.insertObjects(ObjectsDB.java:270)
    at com.compomics.util.experiment.identification.protein_inference.proteintree.ProteinTreeComponentsFactory.saveProteinLengths(ProteinTreeComponentsFactory.java:266)
    at com.compomics.util.experiment.identification.protein_inference.proteintree.ProteinTree.indexProteinsSingleThread(ProteinTree.java:612)
    at com.compomics.util.experiment.identification.protein_inference.proteintree.ProteinTree.loadTags(ProteinTree.java:534)
    at com.compomics.util.experiment.identification.protein_inference.proteintree.ProteinTree.importDb(ProteinTree.java:423)
    at com.compomics.util.experiment.identification.protein_inference.proteintree.ProteinTree.initiateTree(ProteinTree.java:253)
    at com.compomics.util.experiment.identification.protein_inference.proteintree.ProteinTree.initiateTree(ProteinTree.java:189)
    at com.compomics.util.experiment.identification.SequenceFactory.getDefaultProteinTree(SequenceFactory.java:1188)
    at com.compomics.util.experiment.identification.SequenceFactory.getDefaultProteinTree(SequenceFactory.java:1155)
    at eu.isas.peptideshaker.fileimport.FileImporter.importSequences(FileImporter.java:195)
    at eu.isas.peptideshaker.fileimport.FileImporter$IdProcessorFromFile.importFiles(FileImporter.java:399)
    at eu.isas.peptideshaker.fileimport.FileImporter$IdProcessorFromFile.doInBackground(FileImporter.java:388)
    at javax.swing.SwingWorker$1.call(Unknown Source)
    at java.util.concurrent.FutureTask.run(Unknown Source)
    at javax.swing.SwingWorker.run(Unknown Source)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
    at java.lang.Thread.run(Unknown Source)

> If the reported issue resulted in the tool crashing, please
> also upload the file called PeptideShaker.log (found in the
> PeptideShaker-X.Y.Z\resources folder).

Original issue reported on code.google.com by andy...@gmail.com on 6 Mar 2014 at 2:17

[GoogleCodeExporter]

I just released new versions of both SearchGUI and PeptideShaker were this 
particular bug should be fixed.

Let me know if this is not the case and I'll reopen the issue.

Original comment by harald.b...@gmail.com on 6 Mar 2014 at 3:11

• Changed state: Fixed

[GoogleCodeExporter]

The bug has been fixed.
Thanks.

Original comment by andy...@gmail.com on 9 Mar 2014 at 11:33