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Cannot get FASTA output from concat #11

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
I have alignment files in FASTA format that I want to concatenate.  I am using 
version 2.2.4. When I invoke the concat module of Phyutility, the concatenated 
file is in NEXUS format.  I can't tell from the code how to instruct Phyutility 
to output in FASTA format instead.

Here is my exact command...

java -jar phyutility.jar -concat -in *_nttrim.fasta -out concat -log logout

Thanks!
Laura

Original issue reported on code.google.com by laura.w...@gmail.com on 10 Jul 2012 at 7:58