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google-code-export / phyutility

Automatically exported from code.google.com/p/phyutility
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leaf stability #12

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1.the command is  "java -jar phyutility.jar -ls -in ./59genes/59single_gene"
2. three are three trees with no branch length and supporting values, the 
format is newick

What is the expected output? What do you see instead?
Exception in thread "main" java.lang.StringIndexOutOfBoundsException: String 
index out of range: 0
    at java.lang.String.charAt(String.java:686)
    at jade.tree.TreeReader.readTree(Unknown Source)
    at phyutility.mainrunner.Main.leafStab(Unknown Source)
    at phyutility.mainrunner.Main.runArgs(Unknown Source)
    at phyutility.mainrunner.Main.<init>(Unknown Source)
    at phyutility.mainrunner.Main.main(Unknown Source)

What version of the product are you using? On what operating system?
version 2.2.6, lunix

Please provide any additional information below.
I am not sure which kind of tree should be used, rooted or unrooted? If there 
are same taxa in each tree is required?

Original issue reported on code.google.com by peaceful...@gmail.com on 12 Feb 2013 at 9:11