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google-code-export / progenesis-post-processor

Automatically exported from code.google.com/p/progenesis-post-processor
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Java error #9

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. running high 3/x step
2. select progenesis feature.csv file/ tried all seperators: , ; tab
3. click export

What is the expected output? What do you see instead?
create a 0kb file and java log reported:
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
        at uk.ac.liv.progenmzquantmlconvertor.utilities.HighThree.getTopFeatureF
orPeptide(HighThree.java:291)
        at uk.ac.liv.progenmzquantmlconvertor.utilities.HighThree.ExportHi3Resul
t(HighThree.java:74)
        at uk.ac.liv.progenmzquantmlconvertor.gui.ConvertorView.hi3ButtonActionP
erformed(ConvertorView.java:1015)
        at uk.ac.liv.progenmzquantmlconvertor.gui.ConvertorView.access$1100(Conv
ertorView.java:35)
        at uk.ac.liv.progenmzquantmlconvertor.gui.ConvertorView$12.actionPerform
ed(ConvertorView.java:504)
        at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
        at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
        at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
        at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
        at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Sour
ce)
        at java.awt.Component.processMouseEvent(Unknown Source)
        at javax.swing.JComponent.processMouseEvent(Unknown Source)
        at java.awt.Component.processEvent(Unknown Source)
        at java.awt.Container.processEvent(Unknown Source)
        at java.awt.Component.dispatchEventImpl(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)
        at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Window.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)

What version of the product are you using? On what operating system?
1.0.3 win7 64bit and win8.1 64bit
java 7

Please provide any additional information below.

Original issue reported on code.google.com by shy...@gmail.com on 30 Oct 2013 at 2:48

Attachments:

GoogleCodeExporter commented 9 years ago 
Hi,

This is a known bug to version 1.0.3. If the input csv file doesn't have a 'Use 
in quanttitation' column (which is the output format from the latest version of 
Progenesis) and the user ticks 'Use unique peptides' checkbox, the calculation 
will stop and produce zero output.
I have fixed the bug in the next release 1.0.4. But the user can still get 
result by untick the checkbox in version 1.0.3. (see attached output result)

Hope this will answer your question.

Best,
Da

Original comment by ukq...@gmail.com on 31 Oct 2013 at 6:15

Attachments: