Bug - Rerun same pipeline

[GoogleCodeExporter]

At the moment there is a problem when reruning xtracker via Proteosuite, 

Error:
Parameter file validation successful
jar:file:/C:/Users/faviel/.m2/repository/uk/ac/ebi/jmzidml/jmzidentml/1.1.3/jmzi
dentml-1.1.3.jar!/mzIdentML1.1.0.xsd
Exception in thread "LoadingThread" java.lang.StackOverflowError at 
com.sun.org.apache.xerces.internal.impl.xpath.regex.RegularExpression.matchStrin
g(RegularExpression.java:1668)

this occurs at line 165, 

validator.validate(new DOMSource(doc)); on the XMLparser.java

I have commented this line to skip this error, but we need to provide a 
solution for this.

Original issue reported on code.google.com by faviel.g...@gmail.com on 16 Nov 2012 at 11:45

[GoogleCodeExporter]

ProteoSuite runs fine once I commented the line, however the results are 
incorrect. It seems that xtracker object duplicates the results, for example, 
protein list results. This may happen due to objects need to be re-initialised? 
In the examples attached, lines 1-99 correspond to the parameters sent by 
Proteosuite, which are identical. 

Original comment by faviel.g...@gmail.com on 16 Nov 2012 at 12:21

Attachments:

• first.mzq
• second.mzq

[GoogleCodeExporter]

This has been fixed in release 0.2.3

Original comment by faviel.g...@gmail.com on 20 Nov 2012 at 4:34

[GoogleCodeExporter]

Original comment by andrewro...@googlemail.com on 21 Nov 2013 at 12:50

• Changed state: Fixed