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Proteo-suite crashes with metabolomics mzQuantML file #19

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Download https://github.com/sneumann/mtbls2/blob/master/writemzq.mzq.xml
2. Import into Proteo-Suite

Instead of a crash, I'd love to analyse the <DataMatrix> in my mzQ file.

Yours,
Steffen

Original issue reported on code.google.com by sneumann...@gmail.com on 25 Sep 2013 at 8:34

GoogleCodeExporter commented 9 years ago 
I just found this log on the console:

****************************************
*****    P R O T E O S U I T E    ******
****************************************
Memory check at starting up ... 
Used Memory:21 MB
Free Memory:66 MB
Total Memory:87 MB
Max Memory:910 MB
Java version: 1.6.0_27
Architecture: 64-bit
Classpath: proteosuite-0.3.0.jar
****************************************
10:30:42 - Reading Mascot XML files (Total=1)
10:30:42 - Loading Mascot XML view 
10:30:42 - Reading mzQuantML files (Total=1)
10:30:42 - Unmarshalling writemzq.mzq.xml starts 
2013-09-25 10:30:42,857 WARN MzQuantMLElement - MzQuantML Configuration file: 
jar:file:/tmp/ProteoSuite-0.3.0/proteosuite-0.3.0.jar!/defaultMzQuantMLElement.c
fg.xml
LoadMascotIdent: Exception while reading 
/home/sneumann/tex/papers/2012metabolights/mtbls2/writemzq.mzq.xml
java.lang.NullPointerException

Original comment by sneumann...@gmail.com on 25 Sep 2013 at 8:56