Just installed segway 1.0.3, genomedata 1.2.2 and segtools 1.1.6.
Get the following error running the segtools test suite; apparently
segtools.bed_compare was deprecated at some point??? and the test not updated.
root@domU-12-31-39-07-1E-71:/segway-build/src/segtools-1.1.6/test# ./run_all.py
Found test modules: ['test_bed_compare', 'test_overlap',
'test_feature_distance']
Traceback (most recent call last):
File "./run_all.py", line 34, in <module>
sys.exit(main())
File "./run_all.py", line 25, in main
suite = unittest.defaultTestLoader.loadTestsFromNames(modulenames)
File "/usr/lib/python2.6/unittest.py", line 613, in loadTestsFromNames
suites = [self.loadTestsFromName(name, module) for name in names]
File "/usr/lib/python2.6/unittest.py", line 576, in loadTestsFromName
module = __import__('.'.join(parts_copy))
File "/segway-build/src/segtools-1.1.6/test/test_bed_compare.py", line 11, in <module>
from segtools.bed_compare import edit_distance
ImportError: No module named bed_compare
Original issue reported on code.google.com by jay.hesselberth on 13 Apr 2011 at 5:18
Original issue reported on code.google.com by
jay.hesselberthon 13 Apr 2011 at 5:18