Jobs reporting as error and then completing successfully

[GoogleCodeExporter]

>>>Task completed successfully  task    34510   Jan. 31, 2012, 2:49 p.m.
    Deleting containing folder <snip>   Jan. 31, 2012, 2:49 p.m.
    Deleting <snip> task    34510   Jan. 31, 2012, 2:49 p.m.
    Cleaning up job...  task    34510   Jan. 31, 2012, 2:49 p.m.
    Files successfuly staged out    task    34510   Jan. 31, 2012, 2:49 p.m.
    making stageout directory <snip>task    34510   Jan. 31, 2012, 2:49 p.m.
    Staging out remote <snip>   task    34510   Jan. 31, 2012, 2:49 p.m.
    Staging out results task    34510   Jan. 31, 2012, 2:49 p.m.
    Execution finished  task    34510   Jan. 31, 2012, 2:49 p.m.
>>> Remote execution backend sent status message: Error task    34510   Jan. 31, 
2012, 2:49 p.m.
    Remote execution backend sent status message: Unsubmitted   task    34510   Jan. 31, 2012, 1:03 p.m.
    Remote execution backend sent status message: id=714177.epic    task    34510   Jan. 31, 2012, 1:03 p.m.
    Submitting to ssh+pbspro://bioflow@epic.ivec.org:22/ command: blastall -p "blastn" -d "nt" -i "<snip>" -F "F" -m "0" -v "50" -b "50" -o "<snip>"    task    34510   Jan. 31, 2012, 1:03 p.m.
    Copying <snip> Success  task    34510   Jan. 31, 2012, 1:03 p.m.
    Copying <snip> using method copy... task    34510   Jan. 31, 2012, 1:03 p.m.

Original issue reported on code.google.com by amacgregor on 2 Feb 2012 at 8:19

[GoogleCodeExporter]

This can be reproduced by setting up a ls tool and as part of the tool field in 
Admin Tool record including a non existant directory. ie "ls does_not_exist". 
Then when you run the job on the local ex it reports an error in the task 
syslog and then reports the job as a success.

Original comment by amacgregor on 3 Feb 2012 at 8:27

[GoogleCodeExporter]

Original comment by aahun...@gmail.com on 27 Feb 2012 at 2:00

• Added labels: Priority-Critical
• Removed labels: Priority-Medium

[GoogleCodeExporter]

RetryController code appears to fix this problem. Tested using method and all 
states marked as failed.

Original comment by retrogra...@gmail.com on 22 Mar 2012 at 2:16

• Changed state: Fixed