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Automatically exported from code.google.com/p/yabi
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Summitting a PBSPro job that exceeds resources produces no error #262

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Set up a tool on debugq that has more than 1hr walltime. This is what you see 
in the log:

Sep  5 14:46:14 yabi yabi backend: [-] ssh attempting remote command: module 
load blast/2.2.26&&cat >'/tmp/2444d144-e6c8-4d7d-adf1-d5bca4171486.sh' && qsub 
-N 'yabi68697' -e 
'/<snip>/39fb97e4-c148-4693-a78b-88629909fa63/output/STDERR.txt' -o 
'<snip>39fb97e4-c148-4693-a78b-88629909fa63/output/STDOUT.txt' 
'/tmp/2444d144-e6c8-4d7d-adf1-d5bca4171486.sh' ; EXIT=$?  ; rm 
'/tmp/2444d144-e6c8-4d7d-adf1-d5bca4171486.sh' ; exit $EXIT
Sep  5 14:46:14 yabi yabi backend: [-] <class 
'utils.RetryController.PbsproQsubRetryController'> [188]:'qsub: Job exceeds 
queue and/or server resource limits
Sep  5 14:46:14 yabi yabi backend: [-] ' SOFT exit based on default.

The task in Yabi remains at status:exec. It does not fail out and record above 
error in Syslog table.

Original issue reported on code.google.com by amacgregor on 5 Sep 2012 at 6:55