python run_docker.py --helpshort|grep 'num_multimer_predictions_per_model' --num_multimer_predictions_per_model: How many predictions (each with a

[chenqp-git]

tail -f /data01/alphafold/run_logs/rcsb_pdb_1H15.fasta.full_dbs.log I0426 11:34:48.328172 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/mgnify -> /mnt/mgnify_database_path I0426 11:34:48.328236 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database -> /mnt/data_dir I0426 11:34:48.328297 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/pdb_mmcif/mmcif_files -> /mnt/template_mmcif_dir I0426 11:34:48.328365 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/pdb_mmcif -> /mnt/obsolete_pdbs_path I0426 11:34:48.328434 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/uniprot -> /mnt/uniprot_database_path I0426 11:34:48.328509 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/pdb_seqres -> /mnt/pdb_seqres_database_path I0426 11:34:48.328591 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/uniclust30/uniclust30_2018_08 -> /mnt/uniclust30_database_path I0426 11:34:48.328667 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/bfd -> /mnt/bfd_database_path I0426 11:34:51.759719 139772739196992 rundocker.py:255] FATAL Flags parsing error: Unknown command line flag 'num_multimer_predictions_per_model'_ I0426 11:34:51.760205 139772739196992 run_docker.py:255] Pass --helpshort or --helpfull to see help on flags. ^C [1]+ Done nohup python /data01/alphafold/alphafold-main/docker/run_docker.py --fasta_paths=/data01/alphafold/fasta/rcsb_pdb_1H15.fasta --max_template_date=2022-04-19 --model_preset=multimer --num_multimer_predictions_per_model=1 --db_preset=full_dbs --data_dir=/data01/alphafold/database --output_dir=/data01/alphafold/result > /data01/alphafold/run_logs/rcsb_pdb_1H15.fasta.full_dbs.log

其实是有这个参数：

python run_docker.py --helpshort|grep 'num_multimer_predictions_per_model' --num_multimer_predictions_per_model: How many predictions (each with a

[giangpth]

I have the same problem when updating to AlphaFold 2.2.2. Here is the output:

python3 docker/run_docker.py  --output_dir=/home/t.pham1/Results/393ALDOSE --max_template_date=2008-03-31 --data_dir=/data/genetic_databases/ --run_relax=true --model_preset=monomer --fasta_paths=/home/t.pham1/Sequences/393ALDOSE/2PDC.fasta

I0713 09:51:39.602322 140104443201344 run_docker.py:113] Mounting /home/t.pham1/Sequences/393ALDOSE -> /mnt/fasta_path_0
I0713 09:51:39.602449 140104443201344 run_docker.py:113] Mounting /data/genetic_databases/uniref90 -> /mnt/uniref90_database_path
I0713 09:51:39.602540 140104443201344 run_docker.py:113] Mounting /data/genetic_databases/mgnify -> /mnt/mgnify_database_path
I0713 09:51:39.602601 140104443201344 run_docker.py:113] Mounting /data/genetic_databases -> /mnt/data_dir
I0713 09:51:39.602659 140104443201344 run_docker.py:113] Mounting /data/genetic_databases/pdb_mmcif/mmcif_files -> /mnt/template_mmcif_dir
I0713 09:51:39.602723 140104443201344 run_docker.py:113] Mounting /data/genetic_databases/pdb_mmcif -> /mnt/obsolete_pdbs_path
I0713 09:51:39.602800 140104443201344 run_docker.py:113] Mounting /data/genetic_databases/pdb70 -> /mnt/pdb70_database_path
I0713 09:51:39.602869 140104443201344 run_docker.py:113] Mounting /data/genetic_databases/uniclust30/uniclust30_2018_08 -> /mnt/uniclust30_database_path
I0713 09:51:39.602936 140104443201344 run_docker.py:113] Mounting /data/genetic_databases/bfd -> /mnt/bfd_database_path
I0713 09:51:42.325276 140104443201344 run_docker.py:255] FATAL Flags parsing error: Unknown command line flag 'num_multimer_predictions_per_model'
I0713 09:51:42.325702 140104443201344 run_docker.py:255] Pass --helpshort or --helpfull to see help on flags.

Can anyone tell me how to solve this problem, thank you.

[chenqp-git]

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