Extracting single representation from predictions

google-deepmind / alphafold

Open source code for AlphaFold.

Apache License 2.0

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Extracting single representation from predictions #471

Open obada-alzoubi opened 2 years ago

obada-alzoubi commented 2 years ago

I would like to extract single representation from AlphaFold prediction. I tried to use masked_msa (not sure if it the correct field) from result_model_1.pkl . I think what I should get is something like number of residues x 384 from reading the paper. I got a totally different dimensions.

yuxin212 commented 2 years ago

Hi, you can use this repo, developed by me, to produce single representations : )

xinyu-dev commented 1 year ago

I have the same qeustion. Can we extract features without using the MSA block?