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google-deepmind / alphafold

Open source code for AlphaFold.
Apache License 2.0
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model result plddt array missing residuals #683

Open MrNamnam opened 1 year ago

MrNamnam commented 1 year ago

Hi Im running alphafold2 and getting (as expected) model_result for each of the models. when i open the pkl file most of the sequence i run has all the input, but there are few proteins with missing values in the plddt array. for those proteins the array contains something like that - [34.8213755 , 33.35643787, 33.83871669, ..., 35.53027995, 31.07384778, 29.75013154] I thought maybe its only a display problem but it seems to be the real output in the file. i looked for a documentation but couldn't find any relate issues any idea why it can happen?

Thanks!

Htomlinson14 commented 1 year ago

Hi thanks for raising this. Can you please share more information about your run, such as the input sequence (and its length) as well as the length of the plddt array. Also the PDB file produced. Thanks!