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google-deepmind / alphafold

Open source code for AlphaFold.
Apache License 2.0
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Is it still running ? First time using Alphafold in local. #857

Open Ohmori-Insilico opened 10 months ago

Ohmori-Insilico commented 10 months ago

I have installed Alphafold in locally. What does it mean ? Still running.

I have installed Alphafold in locally. What does it mean ? Still running.

--template_mmcif_dir: Path to a directory with template mmCIF structures, each named .cif --uniprot_database_path: Path to the Uniprot database for use by JackHMMer. --uniref30_database_path: Path to the UniRef30 database for use by HHblits. --uniref90_database_path: Path to the Uniref90 database for use by JackHMMER. --[no]use_gpu_relax: Whether to relax on GPU. Relax on GPU can be much faster than CPU, so it is recommended to enable if possible. GPUs must be available if this setting is enabled. --[no]use_precomputed_msas: Whether to read MSAs that have been written to disk instead of running the MSA tools. The MSA files are looked up in the output directory, so it must stay the same between multiple runs that are to reuse the MSAs. WARNING: This will not check if the sequence, database or configuration have changed. (default: 'false')

if this setting is enabled.

--[no]use_precomputed_msas: Whether to read MSAs that have been written to disk instead of running the MSA tools. The MSA files are looked up in the output directory, so it must stay the same between multiple runs that are to reuse the MSAs. WARNING: This will not check if the sequence, database or configuration have changed. (default: 'false')

sherryliu987 commented 7 months ago

If you're struggling to install AlphaFold locally, feel free to try https://www.tamarind.bio/alphafold, a website which offers a no-code interface for bioinformatics tools including protein structure prediction with AlphaFold for free.