google-deepmind / alphafold

Open source code for AlphaFold.
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Missing function in docker build #890

Open forcefield opened 8 months ago

forcefield commented 8 months ago

If I build the docker using the provided docker/Dockerfile, with the following two lines

ARG CUDA=11.8.0
FROM nvidia/cuda:${CUDA}-cudnn8-runtime-ubuntu22.04

When I run docker/run_docker.py, I get the error

I0125 13:11:56.513862 140328062711616 run_docker.py:258] jaxlib.xla_extension.XlaRuntimeError: INTERNAL: Could not find the corresponding function

But if I build using the cuda with the devel label by changing the second line of the above to

FROM nvidia/cuda:${CUDA}-cudnn8-devel-ubuntu22.04

The docker runs fine. So something is missing in the linked library when building using cuda with the runtime label.